Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: iPS cells
ATCC
MeSH
RIKEN BRC
SRX035989
GSM640772: >3Div WCE ChIP-Seq WCE
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA
Attributes by original data submitter
Sample
source_name
Doxycycline-induced MEFs
cell division cohort
>3
agent
Doxycycline
cell type
secondary, inducible MEFs
strain
129/SvJ x C57/B6 hybrid
chip antibody
none
Sequenced DNA Library
library_name
GSM640772: >3Div_WCE_ChIP-Seq_WCE
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
26163796
Reads aligned (%)
93.4
Duplicates removed (%)
20.3
Number of peaks
597 (qval < 1E-05)
mm9
Number of total reads
26163796
Reads aligned (%)
93.0
Duplicates removed (%)
20.2
Number of peaks
699 (qval < 1E-05)
Base call quality data from
DBCLS SRA