SRX035988
GSM640771: 1Div WCE ChIP-Seq WCE

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA

Attributes by original data submitter

Sample

source_name
Doxycycline-induced MEFs
cell division cohort
1
agent
Doxycycline
cell type
secondary, inducible MEFs
strain
129/SvJ x C57/B6 hybrid
chip antibody
none

Sequenced DNA Library

library_name
GSM640771: 1Div_WCE_ChIP-Seq_WCE
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
27817860
Reads aligned (%)
92.4
Duplicates removed (%)
33.9
Number of peaks
657 (qval < 1E-05)

mm9

Number of total reads
27817860
Reads aligned (%)
91.8
Duplicates removed (%)
33.7
Number of peaks
756 (qval < 1E-05)

Base call quality data from DBCLS SRA