SRX035987
GSM640770: MEFControl ChIP-Seq WCE

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

source_name
Uninduced MEFs
cell division cohort
MEFControl
agent
control
cell type
secondary, inducible MEFs
strain
129/SvJ x C57/B6 hybrid
chip antibody
none

Sequenced DNA Library

library_name
GSM640770: MEFControl_ChIP-Seq_WCE
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
26323046
Reads aligned (%)
93.5
Duplicates removed (%)
26.7
Number of peaks
720 (qval < 1E-05)

mm9

Number of total reads
26323046
Reads aligned (%)
93.1
Duplicates removed (%)
26.7
Number of peaks
797 (qval < 1E-05)

Base call quality data from DBCLS SRA