SRX035159
GSM640691: hESC 48h-endodiff EOMES XL ChIP-Seq reps1and2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
EOMES

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC derived mesendodermal cells
NA
NA

Attributes by original data submitter

Sample

source_name
EOMES ChIP fraction: early endoderm (hESC differentiated towards endodermal fate 48h)
cell line
H9 hESC
developmental stage
early endoderm 48h
chip antibody
EOMES
chip antibody vendor
Abcam (Cambridge, UK)

Sequenced DNA Library

library_name
GSM640691: hESC_48h-endodiff_EOMES_XL_ChIP-Seq_reps1and2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
50568239
Reads aligned (%)
78.0
Duplicates removed (%)
23.4
Number of peaks
78552 (qval < 1E-05)

hg38

Number of total reads
50568239
Reads aligned (%)
78.5
Duplicates removed (%)
22.6
Number of peaks
78529 (qval < 1E-05)

Base call quality data from DBCLS SRA