SRX035158
GSM640690: hESC Input XL ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H9
NA
NA

Attributes by original data submitter

Sample

source_name
Input DNA: H9 human embryonic stem cell (hESC)
cell line
H9 hESC
developmental stage
embryonic stem cell
chip antibody
none

Sequenced DNA Library

library_name
GSM640690: hESC_Input_XL_ChIP-Seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
20910017
Reads aligned (%)
45.6
Duplicates removed (%)
1.2
Number of peaks
214 (qval < 1E-05)

hg19

Number of total reads
20910017
Reads aligned (%)
45.2
Duplicates removed (%)
1.6
Number of peaks
381 (qval < 1E-05)

Base call quality data from DBCLS SRA