SRX033328
GSM637408: 10 ug/ml DRB-treated Jurkat cells, ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Blood
Cell type
Jurkat
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Lymphocytic

Attributes by original data submitter

Sample

source_name
Jurkat T lymphoma cells with 10 ug/ml DRB treatment, pol II ChIP
cell line
Jurkat
cell type
T lymphoma cells
treatment
5,6-dichloro-1-β-D-ribofuranosyl-benzimidazole (DRB)
antibody
anti-pol II
antibody name
4H8
antibody vendor
Abcam

Sequenced DNA Library

library_name
GSM637408: 10 ug/ml DRB-treated Jurkat cells, ChIP-Seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
17332830
Reads aligned (%)
96.2
Duplicates removed (%)
3.6
Number of peaks
17216 (qval < 1E-05)

hg19

Number of total reads
17332830
Reads aligned (%)
95.4
Duplicates removed (%)
4.6
Number of peaks
17288 (qval < 1E-05)

Base call quality data from DBCLS SRA