SRX033315
GSM636832: R13-E1-6h-Set2 GFP ChIPSeq 1 and 2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GFP

Cell type

Cell type Class
Embryo
Cell type
1-6h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
R13-E1-6h-Set2
developmental stage
R13-E1-6h-Set2
fly
transgenic
antibody name
GFP
manufacturer
White Lab
catalog
N/A

Sequenced DNA Library

library_name
GSM636832: R13-E1-6h-Set2_GFP_ChIPSeq_1 and 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
8620268
Reads aligned (%)
65.6
Duplicates removed (%)
44.5
Number of peaks
1491 (qval < 1E-05)

dm3

Number of total reads
8620268
Reads aligned (%)
66.1
Duplicates removed (%)
42.1
Number of peaks
666 (qval < 1E-05)

Base call quality data from DBCLS SRA