SRX032890
GSM634629: Human Adipocytes PPARg rep1 (GAII)

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PPARG

Cell type

Cell type Class
Adipocyte
Cell type
SGBS
NA
NA

Attributes by original data submitter

Sample

source_name
Human Adipocytes
cell type
Simpson Golabi Behmel Syndrome (SGBS) human adi- pocytes
chip antibody
PPARgamma
antibody vendor
Santa Cruz Biotechnology
antibody catalog number
sc-7196X

Sequenced DNA Library

library_name
GSM634629: Human_Adipocytes_PPARg_rep1 (GAII)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
27515891
Reads aligned (%)
78.2
Duplicates removed (%)
70.1
Number of peaks
1458 (qval < 1E-05)

hg19

Number of total reads
27515891
Reads aligned (%)
77.0
Duplicates removed (%)
72.1
Number of peaks
1579 (qval < 1E-05)

Base call quality data from DBCLS SRA