Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

source_name
Homogenized Mouse Liver
strain
CD1
cell type
Liver tissue
chip antibody
None

Sequenced DNA Library

library_name
GSM634626: Mouse_Liver_Input_rep1 (GAI)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

mm10

Number of total reads
5076748
Reads aligned (%)
94.0
Duplicates removed (%)
12.8
Number of peaks
113 (qval < 1E-05)

mm9

Number of total reads
5076748
Reads aligned (%)
93.8
Duplicates removed (%)
13.3
Number of peaks
314 (qval < 1E-05)

Base call quality data from DBCLS SRA