Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

source_name
Homogenized Human Liver
cell type
Liver tissue
chip antibody
None

Sequenced DNA Library

library_name
GSM634618: Human_Liver_Input_rep1 (GAII)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
6071180
Reads aligned (%)
97.0
Duplicates removed (%)
1.8
Number of peaks
355 (qval < 1E-05)

hg19

Number of total reads
6071180
Reads aligned (%)
95.9
Duplicates removed (%)
3.1
Number of peaks
488 (qval < 1E-05)

Base call quality data from DBCLS SRA