Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

source_name
Homogenized Human Liver
cell type
Liver tissue
chip antibody
None

Sequenced DNA Library

library_name
GSM634617: Human_Liver_Input_rep1 (GAI)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
3804792
Reads aligned (%)
92.4
Duplicates removed (%)
2.6
Number of peaks
61 (qval < 1E-05)

hg19

Number of total reads
3804792
Reads aligned (%)
91.5
Duplicates removed (%)
3.3
Number of peaks
70 (qval < 1E-05)

Base call quality data from DBCLS SRA