Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
FOXA2

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

source_name
Homogenized Human Liver
cell type
Liver tissue
chip antibody
FOXA2
antibody provider
Dr. Jeffrey Whitsett
antibody reference
Gene Expr Patterns. 2004 Dec;5(2):193-208. Immunohistochemical localization of Foxa1 and Foxa2 in mouse embryos and adult tissues. Besnard V, Wert SE, Hull WM, Whitsett JA.

Sequenced DNA Library

library_name
GSM634616: Human_Liver_FOXA2_rep2 (GAII)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
8301767
Reads aligned (%)
75.5
Duplicates removed (%)
18.1
Number of peaks
659 (qval < 1E-05)

hg38

Number of total reads
8301767
Reads aligned (%)
77.5
Duplicates removed (%)
16.8
Number of peaks
528 (qval < 1E-05)

Base call quality data from DBCLS SRA