SRX032595
GSM630809: HMGN1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HMGN1

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD4+ T cells, HMGN1 ChIP
cell type
CD4+ T cells
antibody
rabbit anti-HMGN1

Sequenced DNA Library

library_name
GSM630809: HMGN1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
16501325
Reads aligned (%)
87.7
Duplicates removed (%)
15.8
Number of peaks
1638 (qval < 1E-05)

hg19

Number of total reads
16501325
Reads aligned (%)
86.9
Duplicates removed (%)
16.6
Number of peaks
1609 (qval < 1E-05)

Base call quality data from DBCLS SRA