Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic Stem Cells (ESCs)
strain
129Sv-C57Bl/6
genotype/variation
wild type
cell type
Embryonic Stem Cells (ESCs)
chip antibody
none (input)

Sequenced DNA Library

library_name
GSM632041: Input [ChIP-Seq]
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
15032584
Reads aligned (%)
89.7
Duplicates removed (%)
17.8
Number of peaks
520 (qval < 1E-05)

mm9

Number of total reads
15032584
Reads aligned (%)
89.6
Duplicates removed (%)
18.0
Number of peaks
557 (qval < 1E-05)

Base call quality data from DBCLS SRA