SRX032465
GSM634248: ESC CTCF-GFP IgG

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
ESC
cell type
R1/E ESC
chip antibody
Goat IgG isotype control
chip antibody manufacturer
Jackson Immunoresearch

Sequenced DNA Library

library_name
GSM634248: ESC CTCF-GFP IgG
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
12440299
Reads aligned (%)
95.1
Duplicates removed (%)
13.3
Number of peaks
363 (qval < 1E-05)

mm9

Number of total reads
12440299
Reads aligned (%)
94.8
Duplicates removed (%)
13.5
Number of peaks
404 (qval < 1E-05)

Base call quality data from DBCLS SRA