SRX032292
GSM628534: CD4 γ-H2AX after irradiation

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H2A.X

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
blood cells
cell type
CD4+ T cells
chip antibody
γ-H2AX
chip antibody vendor
millipore

Sequenced DNA Library

library_name
GSM628534: CD4 γ-H2AX after irradiation
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
96148910
Reads aligned (%)
77.6
Duplicates removed (%)
19.8
Number of peaks
1568 (qval < 1E-05)

hg19

Number of total reads
96148910
Reads aligned (%)
75.7
Duplicates removed (%)
24.7
Number of peaks
1530 (qval < 1E-05)

Base call quality data from DBCLS SRA