SRX032289
GSM628531: CD4 H2AX

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H2A.X

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
blood cells
cell type
CD4+ T cells
chip antibody
H2AX
chip antibody vendor
millipore

Sequenced DNA Library

library_name
GSM628531: CD4 H2AX
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
53575514
Reads aligned (%)
88.5
Duplicates removed (%)
5.5
Number of peaks
1827 (qval < 1E-05)

hg19

Number of total reads
53575514
Reads aligned (%)
87.7
Duplicates removed (%)
6.8
Number of peaks
1872 (qval < 1E-05)

Base call quality data from DBCLS SRA