SRX032125
GSM628268: EcR WPP-4-5h GFP ChIPSeq 1 and 2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GFP

Cell type

Cell type Class
Pupae
Cell type
White prepupae
NA
NA

Attributes by original data submitter

Sample

source_name
EcR_WPP-4-5h
fly
transgenic
developmental stage
: EcR_WPP-4-5h
antibody name
GFP
manufacturer
White Lab
catalog
N/A

Sequenced DNA Library

library_name
GSM628268: EcR_WPP-4-5h_GFP_ChIPSeq_1 and 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
33170941
Reads aligned (%)
89.5
Duplicates removed (%)
53.5
Number of peaks
4189 (qval < 1E-05)

dm3

Number of total reads
33170941
Reads aligned (%)
89.7
Duplicates removed (%)
52.8
Number of peaks
4274 (qval < 1E-05)

Base call quality data from DBCLS SRA