SRX032118
GSM628259: Trem ChIPSeq 1 and 2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
trem

Cell type

Cell type Class
Adult
Cell type
Adult female
NA
NA

Attributes by original data submitter

Sample

source_name
Adult-Female
developmental stage
Adult-Female
antibody name
Trem
manufacturer
Hawley Lab - Cathleen Lake
catalog
N/A

Sequenced DNA Library

library_name
GSM628259: Trem_ChIPSeq_1 and 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

dm3

Number of total reads
48420500
Reads aligned (%)
65.6
Duplicates removed (%)
33.4
Number of peaks
2042 (qval < 1E-05)

dm6

Number of total reads
48420500
Reads aligned (%)
62.8
Duplicates removed (%)
36.0
Number of peaks
2243 (qval < 1E-05)

Base call quality data from DBCLS SRA