SRX032114
GSM628252: HP1-Abcam ChIPSeq 1 and 2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Su(var)205

Cell type

Cell type Class
Embryo
Cell type
16-24h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
E16-24h
developmental stage
E16-24h
antibody name
HP1-Abcam
manufacturer
Abcam
catalog
820130

Sequenced DNA Library

library_name
GSM628252: HP1-Abcam_ChIPSeq_1 and 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

dm3

Number of total reads
44362931
Reads aligned (%)
65.4
Duplicates removed (%)
33.6
Number of peaks
5418 (qval < 1E-05)

dm6

Number of total reads
44362931
Reads aligned (%)
55.2
Duplicates removed (%)
42.7
Number of peaks
0 (qval < 1E-05)

Base call quality data from DBCLS SRA