SRX032109
GSM628224: KW4-Hr39-D1 ChIPSeq 1 and 2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Hr39

Cell type

Cell type Class
Embryo
Cell type
16-24h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
E16-24h
fly
iso1 (y; bw cn sp)
developmental stage
E16-24h
antibody name
KW4-Hr39-D1
manufacturer
White Lab
catalog
N/A

Sequenced DNA Library

library_name
GSM628224: KW4-Hr39-D1_ChIPSeq_1 and 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

dm3

Number of total reads
34592106
Reads aligned (%)
23.7
Duplicates removed (%)
75.1
Number of peaks
9241 (qval < 1E-05)

dm6

Number of total reads
34592106
Reads aligned (%)
17.2
Duplicates removed (%)
81.6
Number of peaks
4205 (qval < 1E-05)

Base call quality data from DBCLS SRA