Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Epidermis
Cell type
NHEK
Tissue
skin
Lineage
ectoderm
Description
epidermal keratinocytes

Attributes by original data submitter

Sample

source_name
normal human epidermal keratinocytes
cell line
NHEK
antibody
rabbit polyclonal antibody
vendor
Millipore
cataog number
07-079
lot number
DAM1472197

Sequenced DNA Library

library_name
GSM624081: NHEK_CHIP_CTCF
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
31623228
Reads aligned (%)
55.0
Duplicates removed (%)
33.5
Number of peaks
66388 (qval < 1E-05)

hg38

Number of total reads
31623228
Reads aligned (%)
55.2
Duplicates removed (%)
33.3
Number of peaks
66653 (qval < 1E-05)

Base call quality data from DBCLS SRA