SRX031247
GSM624080: K562 CHIP CTCF

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
chronic myeloid leukemia
cell line
K562
antibody
rabbit polyclonal antibody
vendor
Millipore
cataog number
07-079
lot number
DAM1472197

Sequenced DNA Library

library_name
GSM624080: K562_CHIP_CTCF
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
28308955
Reads aligned (%)
94.0
Duplicates removed (%)
15.4
Number of peaks
67274 (qval < 1E-05)

hg19

Number of total reads
28308955
Reads aligned (%)
93.5
Duplicates removed (%)
16.1
Number of peaks
66997 (qval < 1E-05)

Base call quality data from DBCLS SRA