SRX031246
GSM624079: HUVEC CHIP CTCF

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Cardiovascular
Cell type
HUVEC
Primary Tissue
Umbilical Cord
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
umbilical vein endothelial cells
cell line
HUVEC
antibody
rabbit polyclonal antibody
vendor
Millipore
cataog number
07-079
lot number
DAM1472197

Sequenced DNA Library

library_name
GSM624079: HUVEC_CHIP_CTCF
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
23010966
Reads aligned (%)
92.9
Duplicates removed (%)
13.4
Number of peaks
45802 (qval < 1E-05)

hg19

Number of total reads
23010966
Reads aligned (%)
92.2
Duplicates removed (%)
14.3
Number of peaks
45691 (qval < 1E-05)

Base call quality data from DBCLS SRA