Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
cervical carcinoma
cell line
HelaS3
antibody
rabbit polyclonal antibody
vendor
Millipore
cataog number
07-079
lot number
DAM1472197

Sequenced DNA Library

library_name
GSM624078: HelaS3_CHIP_CTCF
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
29351129
Reads aligned (%)
71.6
Duplicates removed (%)
23.5
Number of peaks
69370 (qval < 1E-05)

hg38

Number of total reads
29351129
Reads aligned (%)
72.6
Duplicates removed (%)
22.8
Number of peaks
69912 (qval < 1E-05)

Base call quality data from DBCLS SRA