SRX031244
GSM624077: H1 ES CHIP CTCF

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
human embryonic stem cells
cell line
H1
antibody
rabbit polyclonal antibody
vendor
Millipore
cataog number
07-079
lot number
DAM1472197

Sequenced DNA Library

library_name
GSM624077: H1_ES_CHIP_CTCF
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
14958247
Reads aligned (%)
84.7
Duplicates removed (%)
12.4
Number of peaks
52856 (qval < 1E-05)

hg38

Number of total reads
14958247
Reads aligned (%)
85.0
Duplicates removed (%)
12.2
Number of peaks
53006 (qval < 1E-05)

Base call quality data from DBCLS SRA