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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: Mammary glands
ATCC
MeSH
RIKEN BRC
SRX031212
GSM616967: Mg H3K36Me3 input
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Breast
Cell type
Mammary glands
NA
NA
Attributes by original data submitter
Sample
source_name
mammary gland
strain
CD-1
tissue type
mammary gland
developmental stage
lactation day 8
gender
female
antibody
N/A
antibody vendor
N/A
Sequenced DNA Library
library_name
GSM616967: Mg_H3K36Me3_input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
11303700
Reads aligned (%)
95.8
Duplicates removed (%)
6.4
Number of peaks
367 (qval < 1E-05)
mm9
Number of total reads
11303700
Reads aligned (%)
95.6
Duplicates removed (%)
6.6
Number of peaks
438 (qval < 1E-05)
Base call quality data from
DBCLS SRA