SRX031210
GSM616962: Mg H3K27Me3 input

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
Mammary glands
NA
NA

Attributes by original data submitter

Sample

source_name
mammary gland
strain
CD-1
tissue type
mammary gland
developmental stage
lactation day 8
gender
female
antibody
N/A
antibody vendor
N/A

Sequenced DNA Library

library_name
GSM616962: Mg_H3K27Me3_input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
22825821
Reads aligned (%)
97.5
Duplicates removed (%)
11.3
Number of peaks
896 (qval < 1E-05)

mm9

Number of total reads
22825821
Reads aligned (%)
97.3
Duplicates removed (%)
11.3
Number of peaks
955 (qval < 1E-05)

Base call quality data from DBCLS SRA