Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

source_name
liver
strain
CD-1
tissue type
liver
developmental stage
lactation day 8
gender
female
antibody
N/A
antibody vendor
N/A

Sequenced DNA Library

library_name
GSM616951: Lvr_H3K27Me3_input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
18427580
Reads aligned (%)
96.3
Duplicates removed (%)
12.4
Number of peaks
261 (qval < 1E-05)

mm9

Number of total reads
18427580
Reads aligned (%)
96.0
Duplicates removed (%)
12.4
Number of peaks
303 (qval < 1E-05)

Base call quality data from DBCLS SRA