Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GFP

Cell type

Cell type Class
Embryo
Cell type
0-6h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
5T-0-6
developmental stage
5T-0-6
antibody name
GFP
manufacturer
White Lab
catalog
Custom

Sequenced DNA Library

library_name
GSM621128: 5T-0-6_GFP_ChIPSeq_1 and 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

dm6

Number of total reads
45834496
Reads aligned (%)
90.1
Duplicates removed (%)
53.4
Number of peaks
6292 (qval < 1E-05)

dm3

Number of total reads
45834496
Reads aligned (%)
90.6
Duplicates removed (%)
51.5
Number of peaks
4413 (qval < 1E-05)

Base call quality data from DBCLS SRA