SRX029865
GSM611198: IgG ChIP

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
embryonic stem cells
chip or dip
ChIP
cell type
embryonic stem cells
genotype/variation
untransfected
chip/dip antibody
IgG ctrl

Sequenced DNA Library

library_name
GSM611198: IgG_ChIP
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
28745521
Reads aligned (%)
96.7
Duplicates removed (%)
11.0
Number of peaks
761 (qval < 1E-05)

mm9

Number of total reads
28745521
Reads aligned (%)
96.5
Duplicates removed (%)
11.1
Number of peaks
828 (qval < 1E-05)

Base call quality data from DBCLS SRA