SRX029599
GSM614005: Jurkat preimmune

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
T-ALL
NA
NA

Attributes by original data submitter

Sample

source_name
Leukemic T-cell line originally derived from a T-ALL patient
cell type
Leukemic T-cell
chip antibody
normal IgG (Santa Cruz sc-2028)

Sequenced DNA Library

library_name
GSM614005: Jurkat preimmune
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
6537519
Reads aligned (%)
92.1
Duplicates removed (%)
2.4
Number of peaks
103 (qval < 1E-05)

hg19

Number of total reads
6537519
Reads aligned (%)
91.3
Duplicates removed (%)
3.4
Number of peaks
145 (qval < 1E-05)

Base call quality data from DBCLS SRA