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Install and launch IGV before selecting data to visualize
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: FLI1
wikigenes
PDBj
CellType: CD34+
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX029436
GSM607952: MK FLI1
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
FLI1
Cell type
Cell type Class
Blood
Cell type
CD34+
NA
NA
Attributes by original data submitter
Sample
source_name
Megakaryocytes
cell type
megakaryocytes cultured from cord blood CD34-positive cells
chip antibody
FLI1
Sequenced DNA Library
library_name
GSM607952: MK_FLI1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
15578369
Reads aligned (%)
87.9
Duplicates removed (%)
5.4
Number of peaks
3235 (qval < 1E-05)
hg38
Number of total reads
15578369
Reads aligned (%)
89.4
Duplicates removed (%)
4.4
Number of peaks
3258 (qval < 1E-05)
Base call quality data from
DBCLS SRA