SRX029433
GSM607949: MK GATA1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GATA1

Cell type

Cell type Class
Blood
Cell type
CD34+
NA
NA

Attributes by original data submitter

Sample

source_name
Megakaryocytes
cell type
megakaryocytes cultured from cord blood CD34-positive cells
chip antibody
GATA1

Sequenced DNA Library

library_name
GSM607949: MK_GATA1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
16669391
Reads aligned (%)
95.8
Duplicates removed (%)
6.7
Number of peaks
1620 (qval < 1E-05)

hg19

Number of total reads
16669391
Reads aligned (%)
95.2
Duplicates removed (%)
7.5
Number of peaks
1741 (qval < 1E-05)

Base call quality data from DBCLS SRA