SRX029315
GSM612960: HPC GABPa ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GABPA

Cell type

Cell type Class
Blood
Cell type
CD34 Hematopoietic stem cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD34+CD133+ hematopoietic progenitor cells (HPCs)
cell type
CD34+CD133+ hematopoietic progenitor cells (HPCs)
antibody
anti-GABP-alpha
antibody manufacturer
Santa Cruz Biotechnology

Sequenced DNA Library

library_name
GSM612960: HPC GABPa ChIP-Seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
6341023
Reads aligned (%)
52.9
Duplicates removed (%)
22.7
Number of peaks
4484 (qval < 1E-05)

hg19

Number of total reads
6341023
Reads aligned (%)
52.5
Duplicates removed (%)
23.0
Number of peaks
4458 (qval < 1E-05)

Base call quality data from DBCLS SRA