Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562 Cells, 24 hours following induction with TPA
cell line
K562
treatment group
24 hours following induction with TPA
chip antibody
H3K4me1

Sequenced DNA Library

library_name
GSM610339: K562-TPA-H3K4ME1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
17502001
Reads aligned (%)
87.3
Duplicates removed (%)
6.9
Number of peaks
29283 (qval < 1E-05)

hg19

Number of total reads
17502001
Reads aligned (%)
87.1
Duplicates removed (%)
7.2
Number of peaks
29264 (qval < 1E-05)

Base call quality data from DBCLS SRA