SRX029087
GSM610336: K562 TPA-FOS

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
FOS

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562 Cells, 24 hours following induction with TPA
cell line
K562
treatment group
24 hours following induction with TPA
chip antibody
FOS

Sequenced DNA Library

library_name
GSM610336: K562_TPA-FOS
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
53110999
Reads aligned (%)
80.3
Duplicates removed (%)
12.7
Number of peaks
28412 (qval < 1E-05)

hg19

Number of total reads
53110999
Reads aligned (%)
79.6
Duplicates removed (%)
14.3
Number of peaks
28168 (qval < 1E-05)

Base call quality data from DBCLS SRA