Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RUNX1

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562 Cells, 24 hours following induction with TPA
cell line
K562
treatment group
24 hours following induction with TPA
chip antibody
RUNX1

Sequenced DNA Library

library_name
GSM610334: K562-TPA-RUNX1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
17937841
Reads aligned (%)
57.5
Duplicates removed (%)
15.4
Number of peaks
9418 (qval < 1E-05)

hg38

Number of total reads
17937841
Reads aligned (%)
58.7
Duplicates removed (%)
14.4
Number of peaks
9374 (qval < 1E-05)

Base call quality data from DBCLS SRA