SRX029082
GSM610331: K562-NIS

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562 Cells
cell line
K562
treatment group
untreated
chip antibody
none

Sequenced DNA Library

library_name
GSM610331: K562-NIS
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
20723875
Reads aligned (%)
74.0
Duplicates removed (%)
18.9
Number of peaks
599 (qval < 1E-05)

hg19

Number of total reads
20723875
Reads aligned (%)
73.2
Duplicates removed (%)
20.5
Number of peaks
823 (qval < 1E-05)

Base call quality data from DBCLS SRA