SRX029081
GSM610330: CMK-RUNX1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RUNX1

Cell type

Cell type Class
Blood
Cell type
CMK
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
CMK Cells
cell line
CMK
treatment group
untreated
chip antibody
RUNX1

Sequenced DNA Library

library_name
GSM610330: CMK-RUNX1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
9138930
Reads aligned (%)
61.9
Duplicates removed (%)
8.8
Number of peaks
3673 (qval < 1E-05)

hg38

Number of total reads
9138930
Reads aligned (%)
63.0
Duplicates removed (%)
8.0
Number of peaks
3571 (qval < 1E-05)

Base call quality data from DBCLS SRA