SRX029080
GSM610329: CMK-NIS

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
CMK
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
CMK Cells
cell line
CMK
treatment group
untreated
chip antibody
none

Sequenced DNA Library

library_name
GSM610329: CMK-NIS
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
13587099
Reads aligned (%)
59.1
Duplicates removed (%)
10.5
Number of peaks
282 (qval < 1E-05)

hg19

Number of total reads
13587099
Reads aligned (%)
58.4
Duplicates removed (%)
11.7
Number of peaks
448 (qval < 1E-05)

Base call quality data from DBCLS SRA