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For hg38
BigWig
Peak-call (q < 1E-05)
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Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K27me3
wikigenes
PDBj
CellType: K-562
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX028649
GSM608166: H3K27me3 K562 ChIP-seq rep1
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K27me3
Cell type
Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous
Attributes by original data submitter
Sample
source_name
chronic myeloid leukemia cell line
cell line
K562
harvest date
2008-06-12
chip antibody
CST monoclonal rabbit rabbit anti-H3K27me3
Sequenced DNA Library
library_name
GSM608166: H3K27me3_K562_ChIP-seq_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
25940884
Reads aligned (%)
75.2
Duplicates removed (%)
5.8
Number of peaks
1896 (qval < 1E-05)
hg19
Number of total reads
25940884
Reads aligned (%)
75.0
Duplicates removed (%)
6.0
Number of peaks
1891 (qval < 1E-05)
Base call quality data from
DBCLS SRA