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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: ELK4
wikigenes
PDBj
CellType: HeLa
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX028644
GSM608161: ELK4 HeLa ChIP-seq rep1
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
ELK4
Cell type
Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma
Attributes by original data submitter
Sample
source_name
cervical carcinoma
cell line
HeLa-S3
harvest date
06/19/09
chip antibody
Santa Cruzi rabbit anti Sap-1a
vendor
Santa Cruz Biotechnology
Sequenced DNA Library
library_name
GSM608161: ELK4_HeLa_ChIP-seq_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
18397264
Reads aligned (%)
68.3
Duplicates removed (%)
6.4
Number of peaks
1820 (qval < 1E-05)
hg19
Number of total reads
18397264
Reads aligned (%)
67.9
Duplicates removed (%)
7.0
Number of peaks
1806 (qval < 1E-05)
Base call quality data from
DBCLS SRA