Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NR2C2

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
cervical carcinoma
cell line
HeLa-S3
harvest date
06/04/09
chip antibody
rabbit anti TR4 (JD Engel lab)

Sequenced DNA Library

library_name
GSM608159: TR4_HeLa_ChIP-seq_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
23713746
Reads aligned (%)
73.4
Duplicates removed (%)
3.1
Number of peaks
1854 (qval < 1E-05)

hg38

Number of total reads
23713746
Reads aligned (%)
74.5
Duplicates removed (%)
2.4
Number of peaks
1800 (qval < 1E-05)

Base call quality data from DBCLS SRA