Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NR2C2

Cell type

Cell type Class
Blood
Cell type
GM12878
Tissue
blood
Lineage
mesoderm
Description
B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Attributes by original data submitter

Sample

source_name
lymphoblastoid cell line
biomaterial_provider
GM12878
cell line
GM12878
harvest date
2008-10-22
chip antibody
rabbit anti TR4 (JD Engel lab)

Sequenced DNA Library

library_name
GSM608157: TR4_GM_ChIP-seq_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
25479883
Reads aligned (%)
68.7
Duplicates removed (%)
2.4
Number of peaks
856 (qval < 1E-05)

hg38

Number of total reads
25479883
Reads aligned (%)
69.6
Duplicates removed (%)
1.7
Number of peaks
702 (qval < 1E-05)

Base call quality data from DBCLS SRA