SRX028638
GSM608155: TR4 HepG2 ChIP-seq rep1a

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NR2C2

Cell type

Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

source_name
hepatocellular carcinoma
cell line
HepG2
harvest date
2008-08-29
chip antibody
rabbit anti TR4 (JD Engel lab)

Sequenced DNA Library

library_name
GSM608155: TR4_HepG2_ChIP-seq_rep1a
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
10874247
Reads aligned (%)
95.8
Duplicates removed (%)
2.9
Number of peaks
1860 (qval < 1E-05)

hg19

Number of total reads
10874247
Reads aligned (%)
95.1
Duplicates removed (%)
3.5
Number of peaks
1945 (qval < 1E-05)

Base call quality data from DBCLS SRA