SRX028636
GSM608153: TR4 K562 ChIP-seq rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NR2C2

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
chronic myeloid leukemia cell line
cell line
K562
harvest date
05/30/08
chip antibody
rabbit anti TR4 (JD Engel lab)

Sequenced DNA Library

library_name
GSM608153: TR4_K562_ChIP-seq_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
12187206
Reads aligned (%)
73.9
Duplicates removed (%)
1.3
Number of peaks
354 (qval < 1E-05)

hg19

Number of total reads
12187206
Reads aligned (%)
73.3
Duplicates removed (%)
2.0
Number of peaks
464 (qval < 1E-05)

Base call quality data from DBCLS SRA