Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
FOXA1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF-7 breast cancer cells
cell line
MCF-7 breast cancer cell line
agent
estradiol
antibody
anti-FoxA1
antibody vendor
Abcam

Sequenced DNA Library

library_name
GSM588930: FoxA1 ChIP sequencing in E2 (estradiol) treated MCF-7 cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
18099506
Reads aligned (%)
85.1
Duplicates removed (%)
6.4
Number of peaks
35129 (qval < 1E-05)

hg38

Number of total reads
18099506
Reads aligned (%)
86.4
Duplicates removed (%)
5.6
Number of peaks
34948 (qval < 1E-05)

Base call quality data from DBCLS SRA