SRX028634
GSM588929: FoxA1 ChIP sequencing in ETOH (ethanol) treated MCF-7 cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
FOXA1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF-7 breast cancer cells
cell line
MCF-7 breast cancer cell line
agent
ethanol
antibody
anti-FoxA1
antibody vendor
Abcam

Sequenced DNA Library

library_name
GSM588929: FoxA1 ChIP sequencing in ETOH (ethanol) treated MCF-7 cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
23174922
Reads aligned (%)
80.6
Duplicates removed (%)
7.7
Number of peaks
39596 (qval < 1E-05)

hg38

Number of total reads
23174922
Reads aligned (%)
81.9
Duplicates removed (%)
6.8
Number of peaks
37937 (qval < 1E-05)

Base call quality data from DBCLS SRA