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For hg19
Colocalization
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For hg38
Colocalization
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Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: FOXA1
wikigenes
PDBj
CellType: MCF-7
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX028634
GSM588929: FoxA1 ChIP sequencing in ETOH (ethanol) treated MCF-7 cells
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
FOXA1
Cell type
Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma
Attributes by original data submitter
Sample
source_name
MCF-7 breast cancer cells
cell line
MCF-7 breast cancer cell line
agent
ethanol
antibody
anti-FoxA1
antibody vendor
Abcam
Sequenced DNA Library
library_name
GSM588929: FoxA1 ChIP sequencing in ETOH (ethanol) treated MCF-7 cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
23174922
Reads aligned (%)
80.6
Duplicates removed (%)
7.7
Number of peaks
39596 (qval < 1E-05)
hg38
Number of total reads
23174922
Reads aligned (%)
81.9
Duplicates removed (%)
6.8
Number of peaks
37937 (qval < 1E-05)
Base call quality data from
DBCLS SRA