Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TFAP2C

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF-7 breast cancer cells
cell line
MCF-7 breast cancer cell line
agent
estradiol
antibody
anti-AP-2γ
antibody vendor
Santa Cruz

Sequenced DNA Library

library_name
GSM588928: AP-2γ ChIP sequencing in E2 (estradiol) treated MCF-7 cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
17027953
Reads aligned (%)
86.2
Duplicates removed (%)
5.4
Number of peaks
26029 (qval < 1E-05)

hg38

Number of total reads
17027953
Reads aligned (%)
87.7
Duplicates removed (%)
4.4
Number of peaks
25940 (qval < 1E-05)

Base call quality data from DBCLS SRA